GRASS GIS manual: i.gensigset

## NAME

i.gensigset - Generates statistics for i.smap from raster map.

## KEYWORDS

imagery, classification, supervised classification, SMAP, signatures

## SYNOPSIS

i.gensigset
i.gensigset --help
i.gensigset trainingmap=name group=name subgroup=name signaturefile=name [maxsig=integer] [--overwrite] [--help] [--verbose] [--quiet] [--ui]

### Flags:

--overwrite
  Allow output files to overwrite existing files
--help
  Print usage summary
--verbose
  Verbose module output
--quiet
  Quiet module output
--ui
  Force launching GUI dialog

### Parameters:

trainingmap=name [required]
  Ground truth training map
group=name [required]
  Name of input imagery group
subgroup=name [required]
  Name of input imagery subgroup
signaturefile=name [required]
  Name for output file containing result signatures
maxsig=integer
  Maximum number of sub-signatures in any class
  Default: 5

## DESCRIPTION

i.gensigset is a non-interactive method for generating input into i.smap. It is used as the first pass in the a two-pass classification process. It reads a raster map layer, called the training map, which has some of the pixels or regions already classified. i.gensigset will then extract spectral signatures from an image based on the classification of the pixels in the training map and make these signatures available to i.smap.

The user would then execute the GRASS program i.smap to create the final classified map.

## OPTIONS

### Parameters

trainingmap=name
  ground truth training map

  This raster layer, supplied as input by the user, has some of its pixels already classified, and the rest (probably most) of the pixels unclassified. Classified means that the pixel has a non-zero value and unclassified means that the pixel has a zero value.

  This map must be prepared by the user in advance by using a combination of wxGUI vector digitizer and v.to.rast, or some other import/development process (e.g., v.transects) to define the areas representative of the classes in the image.

  At present, there is no fully-interactive tool specifically designed for producing this layer.

group=name
  imagery group

  This is the name of the group that contains the band files which comprise the image to be analyzed. The i.group command is used to construct groups of raster layers which comprise an image.

subgroup=name
  subgroup containing image files

  This names the subgroup within the group that selects a subset of the bands to be analyzed. The i.group command is also used to prepare this subgroup. The subgroup mechanism allows the user to select a subset of all the band files that form an image.

signaturefile=name
  resultant signature file

  This is the resultant signature file (containing the means and covariance matrices) for each class in the training map that is associated with the band files in the subgroup selected.

maxsig=value
  maximum number of sub-signatures in any class
  default: 5

  The spectral signatures which are produced by this program are "mixed" signatures (see NOTES). Each signature contains one or more subsignatures (represeting subclasses). The algorithm in this program starts with a maximum number of subclasses and reduces this number to a minimal number of subclasses which are spectrally distinct. The user has the option to set this starting value with this option.

## INTERACTIVE MODE

If none of the arguments are specified on the command line, i.gensigset will interactively prompt for the names of these maps and files.

It should be noted that interactive mode here only means interactive prompting for maps and files. It does not mean visualization of the signatures that result from the process.

## NOTES

The algorithm in i.gensigset determines the parameters of a spectral class model known as a Gaussian mixture distribution. The parameters are estimated using multispectral image data and a training map which labels the class of a subset of the image pixels. The mixture class parameters are stored as a class signature which can be used for subsequent segmentation (i.e., classification) of the multispectral image.

The Gaussian mixture class is a useful model because it can be used to describe the behavior of an information class which contains pixels with a variety of distinct spectral characteristics. For example, forest, grasslands or urban areas are examples of information classes that a user may wish to separate in an image. However, each of these information classes may contain subclasses each with its own distinctive spectral characteristic. For example, a forest may contain a variety of different tree species each with its own spectral behavior.

The objective of mixture classes is to improve segmentation performance by modeling each information class as a probabilistic mixture with a variety of subclasses. The mixture class model also removes the need to perform an initial unsupervised segmentation for the purposes of identifying these subclasses. However, if misclassified samples are used in the training process, these erroneous samples may be grouped as a separate undesired subclass. Therefore, care should be taken to provided accurate training data.

This clustering algorithm estimates both the number of distinct subclasses in each class, and the spectral mean and covariance for each subclass. The number of subclasses is estimated using Rissanen's minimum description length (MDL) criteria [1]. This criteria attempts to determine the number of subclasses which "best" describe the data. The approximate maximum likelihood estimates of the mean and covariance of the subclasses are computed using the expectation maximization (EM) algorithm [2,3].

## WARNINGS

If warnings like this occur, reducing the remaining classes to 0:

    ...
    WARNING: Removed a singular subsignature number 1 (4 remain)
    WARNING: Removed a singular subsignature number 1 (3 remain)
    WARNING: Removed a singular subsignature number 1 (2 remain)
    WARNING: Removed a singular subsignature number 1 (1 remain)
    WARNING: Unreliable clustering. Try a smaller initial number of clusters
    WARNING: Removed a singular subsignature number 1 (-1 remain)
    WARNING: Unreliable clustering. Try a smaller initial number of clusters
    Number of subclasses is 0

then the user should check for:

- the range of the input data should be between 0 and 100 or 255 but not between 0.0 and 1.0 (r.info and r.univar show the range)
- the training areas need to contain a sufficient amount of pixels

## REFERENCES

- J. Rissanen, "A Universal Prior for Integers and Estimation by Minimum Description Length," Annals of Statistics, vol. 11, no. 2, pp. 417-431, 1983.
- A. Dempster, N. Laird and D. Rubin, "Maximum Likelihood from Incomplete Data via the EM Algorithm," J. Roy. Statist. Soc. B, vol. 39, no. 1, pp. 1-38, 1977.
- E. Redner and H. Walker, "Mixture Densities, Maximum Likelihood and the EM Algorithm," SIAM Review, vol. 26, no. 2, April 1984.

## SEE ALSO

i.group, i.smap, r.info, r.univar, wxGUI vector digitizer

## AUTHORS

Charles Bouman, School of Electrical Engineering, Purdue University
Michael Shapiro, U.S.Army Construction Engineering Research Laboratory

Last changed: $Date: 2018-10-18 21:13:18 +0200 (Thu, 18 Oct 2018) $

## SOURCE CODE

Available at: i.gensigset source code (history)

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© 2003-2018 GRASS Development Team, GRASS GIS 7.4.2 Reference Manual